Namiko Mitarai

Namiko Mitarai

Associate Professor

ORCID: 0000-0003-0116-7606

Publication year:
All
51 - 75 out of 85Page size: 25
  1. 2015
  2. Published

    Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity

    Mitarai, Namiko, Semsey, S. & Sneppen, Kim, 13 Aug 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 2, 022710.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2016
  4. Published

    Food Web Assembly Rules for Generalized Lotka-Volterra Equations

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, Feb 2016, In: PLoS Computational Biology. 12, 2, e1004727.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Three is much more than two in coarsening dynamics of cyclic competitions

    Mitarai, Namiko, Gunnarson, I., Pedersen, B. N., Rosiek, C. A. & Sneppen, Kim, Apr 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 042408.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage lambda and Escherichia coli

    Mitarai, Namiko, Brown, Stanley & Sneppen, Kim, 11 Apr 2016, In: Journal of Bacteriology. 198, 12, p. 1783-1793

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Bifurcation of transition paths induced by coupled bistable systems

    Tian, C. & Mitarai, Namiko, 7 Jun 2016, In: The Journal of Chemical Physics. 144, 21, 215102.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. 2017
  10. Published

    Characterization of phase transitions in a model ecosystem of sessile species

    Uekermann, F., Mathiesen, Joachim & Mitarai, Namiko, 13 Mar 2017, In: Physical Review E. 95, 3, 032409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Occlusion of the ribosome binding site connects the translational initiation frequency, mRNA stability and premature transcription termination

    Eriksen, M., Sneppen, Kim, Pedersen, Steen & Mitarai, Namiko, 14 Mar 2017, In: Frontiers in Microbiology. 8, 7 p., 362.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Deterministic extinction by mixing in cyclically competing species

    Feldager, C. W., Mitarai, Namiko & Ohta, H., 20 Mar 2017, In: Physical Review E. 95, 3, 032318.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation

    Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Existence and construction of large stable food webs

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 8 Sep 2017, In: Physical Review E. 96, 3, 032406.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. 2018
  16. Published

    Dynamic Modeling of Indole Glucosinolate Hydrolysis and Its Impact on Auxin Signaling

    Vik, D., Mitarai, Namiko, Wulff, N., Halkier, Barbara Ann & Burow, Meike, 2018, In: Frontiers in Plant Science. 9, 16 p., 550.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A growing microcolony can survive and support persistent propagation of virulent phages

    Eriksen, R. S., Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 1 Jan 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 2, p. 337-342

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Theory of invasion extinction dynamics in minimal food webs

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 12 Feb 2018, In: Physical Review E. 97, 2, 10 p., 022404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology

    Harms, A., Brodersen, D. E., Mitarai, Namiko & Gerdes, K., 7 Jun 2018, In: Molecular Cell. 70, 5, p. 768-784 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. 2019
  21. Published

    Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli

    Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Gene Expression Changes with Minor Effects on the Population Average Have Major Effects on the Occurrence of Cells with Extreme Protein Concentrations

    Svenningsen, Mikkel Skjoldan, Semsey, S. & Mitarai, Namiko, 2019, In: mSphere. 4, 1, p. 1-6 e00575-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Modeling slow-processing of toxin messenger RNAs in type-I toxin-antitoxin systems: post-segregational killing and noise filtering

    Himeoka, Y. & Mitarai, Namiko, Mar 2019, In: Physical Biology. 16, 2, 026001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells

    Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. 2020
  26. Published

    Sustainability of spatially distributed bacteria-phage systems

    Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 2020, In: Scientific Reports. 10, 1, p. 1-12 3154.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing

    Gummesson, Bertil, Shah, S. A., Borum, A. S., Fessler, M., Mitarai, Namiko, Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2020, In: Frontiers in Genetics. 11, 17 p., 144.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    How pirate phage interferes with helper phage: Comparison of the two distinct strategies

    Mitarai, Namiko, 7 Feb 2020, In: Journal of Theoretical Biology. 486, 9 p., 110096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Dynamics of bacterial populations under the feast-famine cycles

    Himeoka, Y. & Mitarai, Namiko, 27 Mar 2020, In: Physical Review Research. 2, 1, 15 p., 013372.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    On Phage Adsorption to Bacterial Chains

    Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 3 Nov 2020, In: Biophysical Journal. 119, 9, p. 1896-1904 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. 2021
  32. Published

    When to wake up? The optimal waking-up strategies for starvation-induced persistence

    Himeoka, Y. & Mitarai, Namiko, 11 Feb 2021, In: PLoS Computational Biology. 17, 2, 21 p., 1008655.

    Research output: Contribution to journal › Journal article › Research › peer-review

Previous 1 2 3 4 Next

ID: 12071632