Kim Sneppen
Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
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Visualization of large-scale correlations in gene expressions
Eriksen, K., Hörnquist, M. & Sneppen, Kim, 2004, In: Functional & Integrative Genomics. 4, 4, p. 241-245Research output: Contribution to journal › Journal article › Research › peer-review
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Searchability of networks
Rosvall, M., Grönlund, A., Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 72, p. 046117Research output: Contribution to journal › Journal article › Research
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Time Delay as a Key to Apaptosis Induction in the p53 Network
Tiana, G., Jensen, Mogens Høgh & Sneppen, Kim, 2002, In: European Phys. Journal. vol. B 29, p. 135Research output: Contribution to journal › Journal article › Research › peer-review
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Theoretical analysis of epigenetic cell memory by nucleosome modification
Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The cost and capacity of signaling in the Escherichia coli proetin reaction network
Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018Research output: Contribution to journal › Journal article › Research › peer-review
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Komolgorov scaling from random force fields
Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Oscillating gene expressions in regulatory network: Forces, Growth and Form in Soft Condensed Matter: At the Interface between Physics and Biology
Jensen, Mogens Høgh, Sneppen, Kim & Tiana, G., 2005, In: NATO Science Series : Sub-Series II, Mathematics, Physics and Chemistry. 160, p. 195-202Research output: Contribution to journal › Journal article › Research › peer-review
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Dynamical genetic regulation
Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).Research output: Book/Report › Book › Research › peer-review
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UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model
Krishna, S., Maslov, S. & Sneppen, Kim, 2007, In: PLoS Computational Biology. 3, 3, p. 451-462Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Toolbox model of evolution of prokaryotic metabolic networks and their regulation
Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.Research output: Contribution to journal › Conference article › Research › peer-review
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Targeted bacterial immunity buffres phage diversity
Härter, Jan Olaf Mirko, Trusina, Ala & Sneppen, Kim, 21 Aug 2011, In: Journal of Virology. 85, 20, p. 10554-10560 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Locally self-organized quasicritical percolation in a multiple-disease model
Juul, J. S. & Sneppen, Kim, 30 Sep 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 84, 3, p. 0036119 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
Dominant negative autoregulation limits steady-state repression levels in gene networks
Semsey, S., Krishna, S., Erdossy, J., Horváth, P., Orosz, L., Sneppen, Kim & Adhya, S., Jul 2009, In: Journal of Bacteriology. 191, 14, p. 4487-91 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Genetic regulation of fluxes: iron homeostasis of Escherichia coli
Semsey, S., Andersson, A. M. C., Krishna, S., Jensen, Mogens Høgh, Massé, E. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 17, p. 4960-7 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Physics in Molecular Biology
Sneppen, Kim & Zocchi, G., 2005, UK: Cambridge University Press. 319 p.Research output: Book/Report › Book › Research
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Three is much more than two in coarsening dynamics of cyclic competitions
Mitarai, Namiko, Gunnarson, I., Pedersen, B. N., Rosiek, C. A. & Sneppen, Kim, Apr 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 042408.Research output: Contribution to journal › Journal article › Research › peer-review
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Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage lambda and Escherichia coli
Mitarai, Namiko, Brown, Stanley & Sneppen, Kim, 11 Apr 2016, In: Journal of Bacteriology. 198, 12, p. 1783-1793Research output: Contribution to journal › Journal article › Research › peer-review
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Food Web Assembly Rules for Generalized Lotka-Volterra Equations
Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, Feb 2016, In: PLoS Computational Biology. 12, 2, e1004727.Research output: Contribution to journal › Journal article › Research › peer-review
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Self-organization of structures and networks from merging and small-scale fluctuations
Minnhagen, P., Rosvall, M., Sneppen, Kim & Trusina, Ala, 15 Sep 2004, In: Physica A: Statistical Mechanics and its Applications. 340, 4, p. 725-732Research output: Contribution to journal › Journal article › Research › peer-review
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Kronik: Risikobaseret genåbning af Danmark kan give færre alvorligt syge og en hurtigere genåbning
Kirkeby, Carsten, Græsbøll, K., Halasa, T., Sneppen, Kim & Christiansen, L. E., 2020, In: Ingenøren.dk.Research output: Contribution to journal › Journal article › Communication
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Social contagion in a world with asymmetric influence
Halvorsen, G. S., Pedersen, B. N. & Sneppen, Kim, 3 Feb 2021, In: Physical Review E. 103, 2, 5 p., 022303.Research output: Contribution to journal › Journal article › Research › peer-review
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Establishment of heterochromatin in domain-size-dependent bursts
Nickels, Jan Fabio, Edwards, A. K., Charlton, Sebastian Jespersen, Mortensen, A. M., Hougaard, S. C. L., Trusina, Ala, Sneppen, Kim & Thon, Genevieve, 13 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 15, 11 p., e2022887118.Research output: Contribution to journal › Journal article › Research › peer-review
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On Phage Adsorption to Bacterial Chains
Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 3 Nov 2020, In: Biophysical Journal. 119, 9, p. 1896-1904 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Severe population collapses and species extinctions in multihost epidemic dynamics
Maslov, S. & Sneppen, Kim, 22 Aug 2017, In: Physical Review E. 96, 2, 022412.Research output: Contribution to journal › Journal article › Research › peer-review
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Optimal Transport Flows for Distributed Production Networks
Kirkegaard, Julius Bier & Sneppen, Kim, 22 May 2020, In: Physical Review Letters. 124, 20, 5 p., 208101.Research output: Contribution to journal › Journal article › Research › peer-review
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COVID-19 superspreading suggests mitigation by social network modulation
Nielsen, Bjarke Frost, Simonsen, L. & Sneppen, Kim, 15 Mar 2021, In: Physical Review Letters. 126, 6 p., 118301.Research output: Contribution to journal › Letter › Research › peer-review
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From kill the winner to eliminate the winner in open phage-bacteria systems
Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.Research output: Contribution to journal › Journal article › Research › peer-review
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Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2
Nielsen, Bjarke Frost, Saad-roy, C. M., Li, Y., Sneppen, Kim, Simonsen, L., Viboud, C., Levin, S. A., Grenfell, B. T. & Morozov, A. V. (ed.), 15 Feb 2023, In: PLOS Computational Biology. 19, 2, 24 p., e1010896.Research output: Contribution to journal › Journal article › Research › peer-review
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Variability of Individual Infectiousness Derived from Aggregate Statistics of COVID-19
Kirkegaard, Julius Bier & Sneppen, Kim, 15 Jan 2021, In: medRxiv : the preprint server for health sciences. 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states
Härter, Jan Olaf Mirko, Lövkvist, Cecilia, Dodd, I. B. & Sneppen, Kim, 1 Feb 2014, In: Nucleic Acids Research. 42, 4, p. 2235-2244Research output: Contribution to journal › Journal article › Research › peer-review
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Spiky oscillations in NF-KB signalling
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2005, In: Proceedings of the National Academy of Science of the United States of America. 103, p. 10840-10845Research output: Contribution to journal › Journal article › Research › peer-review
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Scaling in fracture and refreezing of sea ice
Sneppen, Kim & Hansen, A. G., 2004, In: Physica A: Statistical Mechanics and its Applications. 331, p. 291-296Research output: Contribution to journal › Journal article › Research › peer-review
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Robustness of the Right Operator in Bacteriophage µ
Metzler, R., Bakk, A. & Sneppen, Kim, 2004, In: Biophysical Journal. 86, p. 58-66Research output: Contribution to journal › Journal article › Research › peer-review
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Specificity and Stability in Topology of Protein Networks
Sneppen, Kim, 2002, In: Kexue (Shanghai). vol. 296, p. 910-256Research output: Contribution to journal › Journal article › Research › peer-review
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Oscillations and temporal signalling in cells
Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17Research output: Contribution to journal › Journal article › Research › peer-review
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Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements
Hao, N., Sneppen, Kim, Shearwin, K. E. & Dodd, I. B., 19 May 2017, In: Nucleic Acids Research. 45, 9, p. 5074-5085Research output: Contribution to journal › Journal article › Research › peer-review
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Gene duplication models for directed networks with limits on growth
Enemark, J. & Sneppen, Kim, 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007Research output: Contribution to journal › Journal article › Research › peer-review
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Combinatorics of feedback in cellular uptake and metabolism of small molecules
Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819Research output: Contribution to journal › Conference article › Research › peer-review
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Economy of operon formation: cotranscription minimizes shortfall in protein complexes
Sneppen, Kim, Pedersen, Steen, Krishna, S., Dodd, I. B. & Semsey, S., 21 Sep 2010, In: Microbe. 1, 4, p. e00177-10Research output: Contribution to journal › Journal article › Research › peer-review
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Structural correlations in bacterial metabolic networks
Gerlee, P. D. M., Bernhardsson, P. J. S., Lizana, G. L. & Sneppen, Kim, 1 Jun 2010, In: FEBS Journal. 277, Suppl. 1, p. 114-114 1 p.Research output: Contribution to journal › Journal article › Research
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Theory for the stability and regulation of epigenetic landscapes
Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda
Avlund, M., Dodd, I. B., Sneppen, Kim & Krishna, S., 11 Dec 2009, In: Journal of Molecular Biology. 394, 4, p. 681-693Research output: Contribution to journal › Journal article › Research › peer-review
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Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression
Csiszovszki, Z., Lewis, D. E. A., Le, P., Sneppen, Kim & Semsey, S., 1 Nov 2012, In: Nucleic Acids Research. 40, 20, p. 10064-10072 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Well-temperate phage: optimal bet-hedging against local environmental collapses
Maslov, S. & Sneppen, Kim, 2 Jun 2015, In: Scientific Reports. 5, 10523.Research output: Contribution to journal › Journal article › Research › peer-review
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A cross-immunization model for the extinction of old influenza strains
Uekermann, F. & Sneppen, Kim, 2016, In: Scientific Reports. 6, 8 p., 25907.Research output: Contribution to journal › Journal article › Research › peer-review
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Diversity Waves in Collapse-Driven Population Dynamics
Maslov, S. & Sneppen, Kim, 1 Sep 2015, In: P L o S One. 11, 9, e1004440.Research output: Contribution to journal › Journal article › Research › peer-review
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Degree landscapes in scale-free networks
Axelsen, J. B., Bernhardsson, S., Rosvall, M., Sneppen, Kim & Trusina, Ala, Sep 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 3Research output: Contribution to journal › Journal article › Research › peer-review
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Cost-benefit of limited isolation and testing in COVID-19 mitigation
Eilersen, Andreas Thomas & Sneppen, Kim, 29 Oct 2020, In: Scientific Reports. 10, 1, 7 p., 18543.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four simple rules that are sufficient to generate the mammalian blastocyst
Nissen, Silas Boye, Perera Pérez, Marta, Martin Gonzalez, Javier, Morgani, S. M. C., Jensen, Mogens Høgh, Sneppen, Kim, Brickman, Joshua Mark & Trusina, Ala, 12 Jul 2017, In: PLOS Biology. 15, 7, p. 1-30 e2000737.Research output: Contribution to journal › Journal article › Research › peer-review
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Sustainability of spatially distributed bacteria-phage systems
Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 2020, In: Scientific Reports. 10, 1, p. 1-12 3154.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 10093
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Direct and indirect effects in the regulation of overlapping promoters
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Single-cell Analysis of Lambda Immunity Regulation
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The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
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