Kim Sneppen
Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
- Published
Model to Link Cell Shape and Polarity with Organogenesis
Nielsen, Bjarke Frost, Nissen, Silas Boye, Sneppen, Kim, Mathiesen, Joachim & Trusina, Ala, 10 Jan 2020, In: iScience. 23, 2, p. 1-10 10 p., 100830.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Variability alignment identifies functional regions in tubulin paralogs
Sneppen, Kim, 2004, In: Protein Science. 13, p. 25-31Research output: Contribution to journal › Journal article › Research › peer-review
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Need, greed and noise: competing strategies and in a trading model
Donangelo, R., Hansen, A., Sneppen, Kim & Souza, S. R., 2005, In: Physica A: Statistical Mechanics and its Applications. 348, p. 496-504Research output: Contribution to journal › Journal article › Research › peer-review
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Self organized scale-free networks from merging and regeneration
Kim, B. J., Trusina, A., Minnhagen, P. & Sneppen, Kim, 2005, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 3, p. 369-372Research output: Contribution to journal › Journal article › Research › peer-review
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A Mathematical Model for Transcriptional Interfernce by RNA Polymerase Traffic in Escherichia coli
Sneppen, Kim, Dodd, J., Shearwin, K., Palmer, A., Schubert, R., Callen, B. & Egan, B., 2005, In: Journal of Molecular Biology. 346, 2, p. 399-409Research output: Contribution to journal › Journal article › Research › peer-review
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Navigating netwoks with limited information
Rosvall, M., Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 71, 6, p. 066111Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic regulation of fluxes: iron homeostasis escherichia coli
Semsey, S., Andersson, A. M. C., Krishna, S., Jensen, Mogens Høgh, Massé, E. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 17, p. 4960-4967Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Minimal model of spiky oscillations in NF-kB signaling
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 4, p. 10840-10845Research output: Contribution to journal › Journal article › Research › peer-review
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Signalling and Feedback in Biological Networks
Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
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Networks and our limited information horizon
Rosvall, M. & Sneppen, Kim, 2007, In: International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 17, 7, p. 2509-2515Research output: Contribution to journal › Journal article › Research › peer-review
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Structure and communication in complex networks
Sneppen, Kim, 2006, In: NATO Science Series : Sub Series III, Computer and sytems sciences. p. 1-28Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Network models of phage-bacteria coevolution
Rosvall, M., Dodd, I. B., Krishna, S. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 6, p. 066105Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling of the genetic switch of bacteriophage TP901-1: a heteromer of CI and MOR ensures robust bistability
Hiizu, N., Pedersen, M., Alsing, A. & Sneppen, Kim, 2009, In: Journal of Molecular Biology. 394, p. 15-28 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Dynamics of the recovery from sRNA-mediated gene silencing
Semsey, S., Bemjamin, J., Mitarai, Namiko, Krishna, S., Csiszovszki, Z., Sneppen, Kim & Masse, E., 2009, In: Cell Cycle. 8, 18, p. 2863-2864 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Dynamic features of gene expression control by small regulatory RNAs
Mitarai, Namiko, Bemjamin, J., Krishna, S., Semsey, S., Csiszovszki, Z., Masse, E. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 26, p. 10655-10659 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A simple histone code opens many paths to epigenetics
Sneppen, Kim & Dodd, I. B., 2012, In: P L o S Computational Biology. 8, 8, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Structure and function of negative feedback loops at the interface of genetic and metabolic networks
Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-62 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Hide-and-seek on complex networks
Sneppen, Kim, Trusina, Ala & Rosvall, M., Mar 2005, In: EPL. 69, 5, p. 853-859Research output: Contribution to journal › Journal article › Research › peer-review
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Quantifying the benefits of translation regulation in the unfolded protein response
Axelsen, J. B. & Sneppen, Kim, 1 Oct 2004, In: Physical Biology. 1, 3, p. 159-165 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Thermodynamics of proteins: Fast folders and sharp transitions
Bakk, A., Dommersnes, P. G., Hansen, A., Høye, J. S., Sneppen, Kim & Jensen, Mogens Høgh, 1 Jan 2002, In: Computer Physics Communications. 147, 1-2, p. 307-312 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy
Cataudella, I., Sneppen, Kim, Gerdes, K. & Mitarai, Namiko, 1 Aug 2013, In: PLoS Computational Biology. 9, 8, e1003174.Research output: Contribution to journal › Journal article › Research › peer-review
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Phage and bacteria support mutual diversity in a narrowing staircase of coexistence
Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 3 Nov 2014, In: I S M E Journal. 28, 11, p. 2317-2326Research output: Contribution to journal › Journal article › Research › peer-review
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The dynamics of phage predation on a microcolony
Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent
Sneppen, Kim & Ringrose, L., 13 May 2019, In: Nature Communications. 10, 18 p., 2133.Research output: Contribution to journal › Journal article › Research › peer-review
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Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks
Kirkegaard, Julius Bier, Nielsen, Bjarke Frost, Trusina, Ala & Sneppen, Kim, 31 Oct 2019, In: Journal of the Royal Society. Interface. 16, 159, 8 p., 20190517.Research output: Contribution to journal › Journal article › Research › peer-review
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Hierarchy and anti-hierarchy in real and scale free networks
Sneppen, Kim & Minnhagen, P., 2004, In: Physical Review Letters. 92, p. 178702Research output: Contribution to journal › Journal article › Research › peer-review
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Computational architecture of the yeast regulatory network: Workshop on Flexibility in Biomolecules, MAY 15-18, 2005 Tempe, AZ
Maslov, S. & Sneppen, Kim, 2005, In: Physical Biology. 2, 4, Sp. iss. Sl, p. S94-S100Research output: Contribution to journal › Journal article › Research › peer-review
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Thermodynanics of Proteins: Fast Folders and Sharp Transitions
Bak, P., Sneppen, Kim & Jensen, Mogens Høgh, 2002, In: Computer Physics Communications. vol. 147, p. 307-312Research output: Contribution to journal › Journal article › Research › peer-review
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Self-assembly of information in networks
Rosvall, M. & Sneppen, Kim, 2006, In: EPL. 74, 6, p. 1109-1115Research output: Contribution to journal › Journal article › Research › peer-review
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The generation of promoter-mediated transcriptional noise in bacteria
Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109Research output: Contribution to journal › Journal article › Research › peer-review
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Ultrasensitive gene regulation by positive feedback loops in nucleosome modification
Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182Research output: Contribution to journal › Journal article › Research › peer-review
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A growing microcolony can survive and support persistent propagation of virulent phages
Eriksen, R. S., Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 1 Jan 2018, In: Proceedings of the National Academy of Sciences USA (PNAS). 115, 2, p. 337-342Research output: Contribution to journal › Journal article › Research › peer-review
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Efficient degradation and expression prioritization with small RANs
Mitarai, Namiko, Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Physical Biology. 4, 3, p. 164-171Research output: Contribution to journal › Journal article › Research › peer-review
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Modeling the two-hybrid detector: Experimental bias on protien interaction networks
Stibius, K. & Sneppen, Kim, 2007, In: Biophysical Journal. 93, 7, p. 2562-2566Research output: Contribution to journal › Journal article › Research › peer-review
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Genetic Regulatory Networks that count to 3
Lehmann, M. & Sneppen, Kim, 1 Jul 2013, In: Journal of Theoretical Biology. 329, p. 15-19 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity
Mathiesen, Joachim, Mitarai, Namiko, Sneppen, Kim & Trusina, Ala, 25 Oct 2011, In: Physical Review Letters. 107, 18, p. 188101Research output: Contribution to journal › Journal article › Research › peer-review
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Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game
Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 26 Jun 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 6, p. 061924 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Labyrinthine clustering in a spatial rock-paper-scissors ecosystem
Juul, J. S., Sneppen, Kim & Mathiesen, Joachim, 8 Apr 2013, In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. 87, 4, p. 042702 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Diffusion retardation by binding of tobramycin in an alginate biofilm model
Cao, B., Christophersen, L., Kolpen, Mette, Jensen, Peter Østrup, Sneppen, Kim, Høiby, Niels, Moser, Claus Ernst & Sams, T., 21 Apr 2016, In: P L o S One. 11, 4, 11 p., e0153616.Research output: Contribution to journal › Journal article › Research › peer-review
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Multi stability and global bifurcations in epidemic model with distributed delay SIRnS-model
Jensen, G. G., Uekermann, F. & Sneppen, Kim, 1 Feb 2019, In: European Physical Journal B. 92, 2, 28.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli
Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Occlusion of the ribosome binding site connects the translational initiation frequency, mRNA stability and premature transcription termination
Eriksen, M., Sneppen, Kim, Pedersen, Steen & Mitarai, Namiko, 14 Mar 2017, In: Frontiers in Microbiology. 8, 7 p., 362.Research output: Contribution to journal › Journal article › Research › peer-review
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Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
Maslov, S. & Sneppen, Kim, 4 Jan 2017, In: Scientific Reports. 7, 39642.Research output: Contribution to journal › Journal article › Research › peer-review
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STUDY OF DECAY AND ABSORPTION OF THE DELTA-RESONANCE IN NUCLEI WITH A 4-PI DETECTOR
HENNINO, T., RAMSTEIN, B., BACHELIER, D., BOHLEN, HG., BOYARD, JL., ELLEGAARD, C., GAARDE, C., GOSSET, J., JOURDAIN, JC., LARSEN, JS., LEMAIRE, MC., LHOTE, D., MORSCH, HP., OSTERLUND, M., POITOU, J., RADVANYI, P., ROYSTEPHAN, M., SAMS, T., SNEPPEN, K., VALETTE, O. & 1 others, , 4 Jun 1992, In: Physics Letters B: Particle Physics, Nuclear Physics and Cosmology. 283, 1-2, p. 42-46Research output: Contribution to journal › Journal article › Research › peer-review
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The uneasy coexistence of predators and pathogens
Eilersen, Andreas Thomas & Sneppen, Kim, 2 Jul 2020, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 7, 7 p., 42.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modelling value bubbles in an attention based economy
Toftdahl Olesen, C. & Sneppen, Kim, 2 Mar 2020, In: European Physical Journal B. 93, 3, 5 p., 36.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control
Maslov, S. & Sneppen, Kim, 1 Nov 2019, In: mSystems. 5, 4(6), e00470-19.Research output: Contribution to journal › Journal article › Research › peer-review
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Emergence of networks of shared restriction-modification systems in phage-bacteria ecosystems
Eriksen, R. S., Malhotra, N., Seshasayee, A. S. N., Sneppen, Kim & Krishna, S., 2022, In: Journal of Biosciences. 47, 3, 19 p., 38.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic switching with asymmetric bridging interactions
Skjegstad, L. E. J., Nickels, Jan Fabio, Sneppen, Kim & Kirkegaard, Julius Bier, 20 Jun 2023, In: Biophysical Journal. 122, 12, p. 2421-2429 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli
Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678Research output: Contribution to journal › Journal article › Research › peer-review
ID: 10093
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Direct and indirect effects in the regulation of overlapping promoters
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Single-cell Analysis of Lambda Immunity Regulation
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The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
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