Namiko Mitarai
Associate Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
- Published
When to wake up? The optimal waking-up strategies for starvation-induced persistence
Himeoka, Y. & Mitarai, Namiko, 11 Feb 2021, In: PLoS Computational Biology. 17, 2, 21 p., 1008655.Research output: Contribution to journal › Journal article › Research › peer-review
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Wet granular materials
Mitarai, Namiko & Nori, F., 30 Jun 2006, In: Advances in Physics. 55, 1-2, p. 1-45 45 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Velocity correlations in dense granular shear flows: Effects on energy dissipation and normal stress
Mitarai, Namiko & Nakanishi, H., 2007, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 031305Research output: Contribution to journal › Journal article › Research › peer-review
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Valine-Induced Isoleucine Starvation in Escherichia coli K-12 Studied by Spike-In Normalized RNA Sequencing
Gummesson, Bertil, Shah, S. A., Borum, A. S., Fessler, M., Mitarai, Namiko, Sørensen, Michael Askvad & Svenningsen, Sine Lo, 2020, In: Frontiers in Genetics. 11, 17 p., 144.Research output: Contribution to journal › Journal article › Research › peer-review
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Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology
Harms, A., Brodersen, D. E., Mitarai, Namiko & Gerdes, K., 7 Jun 2018, In: Molecular Cell. 70, 5, p. 768-784 17 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Three is much more than two in coarsening dynamics of cyclic competitions
Mitarai, Namiko, Gunnarson, I., Pedersen, B. N., Rosiek, C. A. & Sneppen, Kim, Apr 2016, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 93, 042408.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Theory of invasion extinction dynamics in minimal food webs
Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 12 Feb 2018, In: Physical Review E. 97, 2, 10 p., 022404.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Theory for the stability and regulation of epigenetic landscapes
Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The generation of promoter-mediated transcriptional noise in bacteria
Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
Pedersen, M., Nissen, S., Mitarai, Namiko, Svenningsen, Sine Lo, Sneppen, Kim & Pedersen, Steen, 2011, In: Journal of Molecular Biology. 407, 1, p. 35-44 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The dynamics of phage predation on a microcolony
Eriksen, R. S., Larsen, Frej Andreas Nøhr, Svenningsen, Sine Lo, Sneppen, Kim & Mitarai, Namiko, 2024, In: Biophysical Journal. 123, 2, p. 147-156 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms
Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation
Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Switching between oscillations and homeostasis in competing negative and positive feedback motifs
Li, W., Krishna, S., Pigolotti, S., Mitarai, Namiko & Jensen, Mogens Høgh, 21 Aug 2012, In: Journal of Theoretical Biology. 307, p. 205-210Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sustainable diversity of phage-bacteria systems
Mitarai, Namiko, Marantos, Anastasios & Sneppen, Kim, 1 Jun 2023, In: Current Opinion in Systems Biology. 35, 6 p., 100468.Research output: Contribution to journal › Review › Research › peer-review
- Published
Sustainability of spatially distributed bacteria-phage systems
Eriksen, R. S., Mitarai, Namiko & Sneppen, Kim, 2020, In: Scientific Reports. 10, 1, p. 1-12 3154.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stability analysis of optimal velocity model for traffic and granular flow under open boundary condition
Mitarai, Namiko & Nakanishi, H., 1 Aug 1999, In: Journal of the Physical Society of Japan. 68, 8, p. 2475-2478Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stability analysis of collisional granular flow on a slope
Mitarai, Namiko & Nakanishi, H., 30 Sep 2003, In: International Journal of Modern Physics B. 17, 22-24 II, p. 4290-4294 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Speciation, diversification, and coexistence of sessile species that compete for space
Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal structure of traffic flow in a system with an open boundary
Mitarai, Namiko & Nakanishi, H., 21 Aug 2000, In: Physical Review Letters. 85, 8, p. 1766-1769Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simple model for wet granular materials with liquid cluster
Mitarai, Namiko & Nakanishi, H., 1 Dec 2009, In: EPL. 88, 6, p. 64001Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simple Interaction Model for Particlly Wet Granular Materials
Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Shear Thickening Oscillation in a Dilatant Fluid
Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization
Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases
Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926Research output: Contribution to journal › Journal article › Research › peer-review
ID: 12071632
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1916
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The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1475
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Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy
Research output: Contribution to journal › Journal article › Research › peer-review
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842
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Speciation, diversification, and coexistence of sessile species that compete for space
Research output: Contribution to journal › Journal article › Research › peer-review
Published