Namiko Mitarai
Associate Professor
Biocomplexity
Blegdamsvej 17
2100 København Ø
- Published
Spatiotemporal structure of traffic flow in a system with an open boundary
Mitarai, Namiko & Nakanishi, H., 21 Aug 2000, In: Physical Review Letters. 85, 8, p. 1766-1769Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Efficient degradation and expression prioritization with small RANs
Mitarai, Namiko, Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Physical Biology. 4, 3, p. 164-171Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Speciation, diversification, and coexistence of sessile species that compete for space
Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665Research output: Contribution to journal › Journal article › Research › peer-review
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Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization
Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stability analysis of collisional granular flow on a slope
Mitarai, Namiko & Nakanishi, H., 30 Sep 2003, In: International Journal of Modern Physics B. 17, 22-24 II, p. 4290-4294 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Convective instability and structure formation in traffic flow
Mitarai, Namiko & Nakanishi, H., 2 Nov 2000, In: Journal of the Physical Society of Japan. 69, 11, p. 3752-3761Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity
Mitarai, Namiko, Semsey, S. & Sneppen, Kim, 13 Aug 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 2, 022710.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow
Mitarai, Namiko & Nakanishi, H., 1 Apr 2005, In: Physical Review Letters. 94, 12, p. 128001 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The generation of promoter-mediated transcriptional noise in bacteria
Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simple Interaction Model for Particlly Wet Granular Materials
Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Granular flow: dry and wet
Mitarai, Namiko & Nakanishi, H., 2012, In: European Physical Journal. Special Topics. 204, 1, p. 5-17 13 p.Research output: Contribution to journal › Review › Research › peer-review
Erratum: Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow (Physical Review Letters (2005) 94 (128001))
Mitarai, Namiko & Nakanishi, H., 13 Jul 2006, In: Physical Review Letters. 97, 1, 019902.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Stability analysis of optimal velocity model for traffic and granular flow under open boundary condition
Mitarai, Namiko & Nakanishi, H., 1 Aug 1999, In: Journal of the Physical Society of Japan. 68, 8, p. 2475-2478Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Velocity correlations in dense granular shear flows: Effects on energy dissipation and normal stress
Mitarai, Namiko & Nakanishi, H., 2007, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 031305Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coupled positive and negative feedbacks produce diverse gene expression patterns in colonies
Mitarai, Namiko, Jensen, Mogens Høgh & Semsey, S., 7 Apr 2015, In: mBio (Print). 6, 2, e00059-15 .Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Experimental observation of shear thickening oscillation
Nagahiro, S., Nakanishi, H. & Mitarai, Namiko, 1 Oct 2013, In: EPL. 104, 2, 28002.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamical analysis on gene activity in the presence of repressors and an interfering promoter
Nakanishi, H., Mitarai, Namiko & Sneppen, Kim, 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluid dynamics of dilatant fluid
Nakanishi, H., Nagahiro, S. & Mitarai, Namiko, 12 Jan 2012, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 85, 1, p. 011401 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shear Thickening Oscillation in a Dilatant Fluid
Nakanishi, H. & Mitarai, Namiko, 25 Feb 2011, In: Journal of the Physical Society of Japan. 80, 3, p. 033801Research output: Contribution to journal › Journal article › Research › peer-review
Lattice model of sweeping interface for drying process in water-granule mixture
Nakanishi, H., Yamamoto, R., Hayase, Y. & Mitarai, Namiko, 1 Feb 2007, In: Journal of the Physical Society of Japan. 76, 2, 024003.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms
Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
Pedersen, M., Nissen, S., Mitarai, Namiko, Svenningsen, Sine Lo, Sneppen, Kim & Pedersen, Steen, 2011, In: Journal of Molecular Biology. 407, 1, p. 35-44 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli
Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamics of the recovery from sRNA-mediated gene silencing
Semsey, S., Bemjamin, J., Mitarai, Namiko, Krishna, S., Csiszovszki, Z., Sneppen, Kim & Masse, E., 2009, In: Cell Cycle. 8, 18, p. 2863-2864 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nonideal behavior of intramolecular structure factor of dilute polymers in a theta solvent
Shimomura, K., Nakanishi, H. & Mitarai, Namiko, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 051804Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multistability with a Metastable Mixed State
Sneppen, Kim & Mitarai, Namiko, 5 Sep 2012, In: Physical Review Letters. 109, 10, p. 100602 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Existence of log-phase Escherichia coli persisters and lasting memory of a starvation pulse
Svenningsen, Mikkel Skjoldan, Svenningsen, Sine Lo, Sørensen, Michael Askvad & Mitarai, Namiko, 2022, In: Life Science Alliance. 5, 2, 9 p., e202101076.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Birth and Resuscitation of (p)ppGpp Induced Antibiotic Tolerant Persister Cells
Svenningsen, Mikkel Skjoldan, Veress, A., Harms, A., Mitarai, Namiko & Semsey, S., 15 Apr 2019, In: Scientific Reports. 9, 13 p., 6056.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gene Expression Changes with Minor Effects on the Population Average Have Major Effects on the Occurrence of Cells with Extreme Protein Concentrations
Svenningsen, Mikkel Skjoldan, Semsey, S. & Mitarai, Namiko, 2019, In: mSphere. 4, 1, p. 1-6 e00575-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A scaling law of multilevel evolution: how the balance between within- and among-collective evolution is determined
Takeuchi, N., Mitarai, Namiko & Kaneko, Kunihiko, 4 Feb 2022, In: Genetics. 220, 2, 9 p., 182.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bifurcation of transition paths induced by coupled bistable systems
Tian, C. & Mitarai, Namiko, 7 Jun 2016, In: The Journal of Chemical Physics. 144, 21, 215102.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases
Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation
Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of phase transitions in a model ecosystem of sessile species
Uekermann, F., Mathiesen, Joachim & Mitarai, Namiko, 13 Mar 2017, In: Physical Review E. 95, 3, 032409.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamic Modeling of Indole Glucosinolate Hydrolysis and Its Impact on Auxin Signaling
Vik, D., Mitarai, Namiko, Wulff, N., Halkier, Barbara Ann & Burow, Meike, 2018, In: Frontiers in Plant Science. 9, 16 p., 550.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 12071632
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1916
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The functional half-life of an mRNA depends on the ribosome spacing in an early coding region
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
1475
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Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy
Research output: Contribution to journal › Journal article › Research › peer-review
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842
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Speciation, diversification, and coexistence of sessile species that compete for space
Research output: Contribution to journal › Journal article › Research › peer-review
Published