Namiko Mitarai

Namiko Mitarai

Associate Professor


  1. Published

    Food Web Assembly Rules for Generalized Lotka-Volterra Equations

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, Feb 2016, In: PLoS Computational Biology. 12, 2, e1004727.

    Research output: Contribution to journalJournal articleResearchpeer-review

  2. Published

    Phage and bacteria support mutual diversity in a narrowing staircase of coexistence

    Härter, Jan Olaf Mirko, Mitarai, Namiko & Sneppen, Kim, 3 Nov 2014, In: I S M E Journal. 28, 11, p. 2317-2326

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: Model simulations

    Imafuku, Y., Mitarai, Namiko, Tawada, K. & Nakanishi, H., 7 Feb 2008, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 112, 5, p. 1487-1493

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Loewner driving functions for off-critical percolation clusters

    Kondo, Y., Mitarai, Namiko & Nakanishi, H., 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 80, 5, Part 1, p. 050102

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Switching between oscillations and homeostasis in competing negative and positive feedback motifs

    Li, W., Krishna, S., Pigolotti, S., Mitarai, Namiko & Jensen, Mogens Høgh, 21 Aug 2012, In: Journal of Theoretical Biology. 307, p. 205-210

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds

    Lizana, G. L., Mitarai, Namiko & Sneppen, Kim, 28 Jun 2011, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 83, 6, p. 066116 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    From kill the winner to eliminate the winner in open phage-bacteria systems

    Marantos, Anastasios, Mitarai, Namiko & Sneppen, Kim, 8 Aug 2022, In: PLOS Computational Biology. 18, 8, 15 p., e1010400.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Circuit architecture explains functional similarity of bacterial heat shock responses

    Masayo, I., Mitarai, Namiko & Trusina, Ala, 1 Dec 2012, In: Physical Biology. 9, 6, p. 066003

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Ecosystems with Mutually Exclusive Interactions Self-Organize to a State of High Diversity

    Mathiesen, Joachim, Mitarai, Namiko, Sneppen, Kim & Trusina, Ala, 25 Oct 2011, In: Physical Review Letters. 107, 18, p. 188101

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Theory for the stability and regulation of epigenetic landscapes

    Micheelsen, M. A., Mitarai, Namiko, Sneppen, Kim & Dodd, I. B., 4 Jun 2010, In: Physical Biology. 7, 2, p. 026010 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Simple model for wet granular materials with liquid cluster

    Mitarai, Namiko & Nakanishi, H., 1 Dec 2009, In: EPL. 88, 6, p. 64001

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Efficient degradation and expression prioritization with small RANs

    Mitarai, Namiko, Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Physical Biology. 4, 3, p. 164-171

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    Speciation, diversification, and coexistence of sessile species that compete for space

    Mitarai, Namiko, Heinsalu, E. & Sneppen, Kim, 12 May 2014, In: PloS One. 9, 5, p. e96665

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

    Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Stability analysis of collisional granular flow on a slope

    Mitarai, Namiko & Nakanishi, H., 30 Sep 2003, In: International Journal of Modern Physics B. 17, 22-24 II, p. 4290-4294 5 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Convective instability and structure formation in traffic flow

    Mitarai, Namiko & Nakanishi, H., 2 Nov 2000, In: Journal of the Physical Society of Japan. 69, 11, p. 3752-3761

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity

    Mitarai, Namiko, Semsey, S. & Sneppen, Kim, 13 Aug 2015, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 92, 2, 022710.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow

    Mitarai, Namiko & Nakanishi, H., 1 Apr 2005, In: Physical Review Letters. 94, 12, p. 128001 4 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    The generation of promoter-mediated transcriptional noise in bacteria

    Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Simple Interaction Model for Particlly Wet Granular Materials

    Mitarai, Namiko & Nakanishi, H., 1 Feb 2010, In: A I P Conference Proceedings Series. 1227, p. 214-220

    Research output: Contribution to journalConference articleResearchpeer-review

  21. Published

    Granular flow: dry and wet

    Mitarai, Namiko & Nakanishi, H., 2012, In: European Physical Journal. Special Topics. 204, 1, p. 5-17 13 p.

    Research output: Contribution to journalReviewResearchpeer-review

  22. Erratum: Bagnold scaling, density plateau, and kinetic theory analysis of dense granular flow (Physical Review Letters (2005) 94 (128001))

    Mitarai, Namiko & Nakanishi, H., 13 Jul 2006, In: Physical Review Letters. 97, 1, 019902.

    Research output: Contribution to journalComment/debateResearchpeer-review

  23. Published

    Stability analysis of optimal velocity model for traffic and granular flow under open boundary condition

    Mitarai, Namiko & Nakanishi, H., 1 Aug 1999, In: Journal of the Physical Society of Japan. 68, 8, p. 2475-2478

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Velocity correlations in dense granular shear flows: Effects on energy dissipation and normal stress

    Mitarai, Namiko & Nakanishi, H., 2007, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 75, 3, p. 031305

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Coupled positive and negative feedbacks produce diverse gene expression patterns in colonies

    Mitarai, Namiko, Jensen, Mogens Høgh & Semsey, S., 7 Apr 2015, In: mBio (Print). 6, 2, e00059-15 .

    Research output: Contribution to journalJournal articleResearchpeer-review

ID: 12071632