Kim Sneppen

Kim Sneppen

Professor

ORCID: 0000-0001-9820-3567

Publication year:
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1 - 100 out of 217Page size: 100
  1. 1991
  2. Published

    Flow effects in intermediate-energy nuclear collisions

    Barz, H. W., Bondorf, J. P., Donangelo, R., Elmér, R., Hansen, F. S., Jakobsson, B., Karlsson, L., Nifenecker, H., Schulz, H., Schussler, F., Sneppen, Kim & Söderström, K., 2 Sep 1991, In: Nuclear Physics, Section A. 531, 2, p. 453-460 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 1992
  4. Published

    STUDY OF DECAY AND ABSORPTION OF THE DELTA-RESONANCE IN NUCLEI WITH A 4-PI DETECTOR

    HENNINO, T., RAMSTEIN, B., BACHELIER, D., BOHLEN, HG., BOYARD, JL., ELLEGAARD, C., GAARDE, C., GOSSET, J., JOURDAIN, JC., LARSEN, JS., LEMAIRE, MC., LHOTE, D., MORSCH, HP., OSTERLUND, M., POITOU, J., RADVANYI, P., ROYSTEPHAN, M., SAMS, T., SNEPPEN, K., VALETTE, O. & 1 others, ZUPRANSKI, P., 4 Jun 1992, In: Physics Letters B: Particle Physics, Nuclear Physics and Cosmology. 283, 1-2, p. 42-46

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. 1994
  6. Published

    Statistical multifragmentation: Comparison of two quite successful models

    Gross, D. H. E. & Sneppen, Kim, 17 Jan 1994, In: Nuclear Physics A. 567, 2, p. 317

    Research output: Contribution to journal › Journal article › Research

  7. 1995
  8. Published

    Distributions of Self Interactions and Voids in 1+1d Directed Percolation

    Huber, G., Jensen, Mogens Høgh & Sneppen, Kim, 1 Sep 1995, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 52, 3, p. 2133-2136

    Research output: Contribution to journal › Journal article › Research

  9. 1997
  10. Published

    Morphological Instabilities in a growing Yeast Colony: Experiment and Theory

    Sams, T., Jensen, Mogens Høgh, Sneppen, Kim, Christensen, B., Ellegaard, Clive Sigurd & Thrane, U., 14 Jul 1997, In: Physical Review Letters. 79, 2, p. 313-316

    Research output: Contribution to journal › Journal article › Research

  11. 2002
  12. Published

    Cooperativity in a trading model with memory and production

    Donangelo, R. & Sneppen, Kim, 2002, In: Physica A: Statistical Mechanics and its Applications. 316, 1-4, p. 581-591

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Epigenetics as a first exit problem

    Sneppen, Kim & Aurell, E., 2002, In: Physical Review Letters. 88, 4, p. 048101 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Profit Profiles in Correlated Markets

    Sneppen, Kim, 2002, In: Physica B: Condensed Matter. vol. A 316, p. 561-567

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Protein Interaction Networks Beyond Artifacts

    Sneppen, Kim, 2002, In: FEBS. vol. 530, p. 255-256

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Specificity and Stability in Topology of Protein Networks

    Sneppen, Kim, 2002, In: Kexue (Shanghai). vol. 296, p. 910-256

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Stability Puzzles in λ Phage

    Sneppen, Kim, 2002, In: Physical Review D (Particles, Fields, Gravitation and Cosmology). vol. E 65, p. 051914

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Thermodynanics of Proteins: Fast Folders and Sharp Transitions

    Bak, P., Sneppen, Kim & Jensen, Mogens Høgh, 2002, In: Computer Physics Communications. vol. 147, p. 307-312

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Time Delay as a Key to Apaptosis Induction in the p53 Network

    Tiana, G., Jensen, Mogens Høgh & Sneppen, Kim, 2002, In: European Phys. Journal. vol. B 29, p. 135

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Thermodynamics of proteins: Fast folders and sharp transitions

    Bakk, A., Dommersnes, P. G., Hansen, A., Høye, J. S., Sneppen, Kim & Jensen, Mogens Høgh, 1 Jan 2002, In: Computer Physics Communications. 147, 1-2, p. 307-312 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. 2003
  22. Published

    Competition between diffusion and fragmentation: an important evolutionary process of nature

    Borg, J., Jensen, Mogens Høgh, Mathiesen, J. K., Olesen, Poul & Sneppen, Kim, 2003, In: Physical Review Letters. 91, p. 266103

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Single-cell Analysis of Lambda Immunity Regulation

    Bæk, K. T., Svenningsen, Sine Lo, Eisen, H., Sneppen, Kim & Brown, Stanley, 2003, In: Journal of Molecular Biology. 334, 3, p. 363-372 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Sustained oscillations and time delay in gene expression of protein hesl

    Jensen, Mogens Høgh & Sneppen, Kim, 2003, In: FEBS Letters. 541, p. 176-177

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. 2004
  26. Published

    A simple model for self organization of bipartite networks

    Sneppen, Kim, Rosvall, M., Trusina, A. & Minnhagen, P., 2004, In: EPL. 67, 3, p. 349-354

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Detection in complex networks: correlation profile of the internet

    Sneppen, Kim, Maslov, S. & Zalizynak, A., 2004, In: Physica A: Statistical Mechanics and its Applications. 333, p. 529-540

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Diffusion on complex networks: a way to probe their large-scale topological structures

    Sneppen, Kim, Simonsen, I. & Eriksen, K., 2004, In: Physica A: Statistical Mechanics and its Applications. 336, p. 163-173

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Hierarchy and anti-hierarchy in real and scale free networks

    Sneppen, Kim & Minnhagen, P., 2004, In: Physical Review Letters. 92, p. 178702

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Robustness of the Right Operator in Bacteriophage µ

    Metzler, R., Bakk, A. & Sneppen, Kim, 2004, In: Biophysical Journal. 86, p. 58-66

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Scaling in fracture and refreezing of sea ice

    Sneppen, Kim & Hansen, A. G., 2004, In: Physica A: Statistical Mechanics and its Applications. 331, p. 291-296

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Sensitivity of phage µ upon variations of the gibbs free energy

    Bakk, A., Sneppen, Kim & Metzler, R., 2004, In: Israel Journal of Chemistry. 44, p. 309-315

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Upstream plasticity and downstream robustness in evolution of molecular networks

    Maslov, S., Sneppen, Kim, Astrup Eriksen, K. & Yan, K., 2004, In: BMC Evolutionary Biology. 4, p. 9-

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Variability alignment identifies functional regions in tubulin paralogs

    Sneppen, Kim, 2004, In: Protein Science. 13, p. 25-31

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Visualization of large-scale correlations in gene expressions

    Eriksen, K., Hörnquist, M. & Sneppen, Kim, 2004, In: Functional & Integrative Genomics. 4, 4, p. 241-245

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Hierarchy measures in complex networks

    Trusina, Ala, Maslov, S., Minnhagen, P. & Sneppen, Kim, 30 Apr 2004, In: Physical Review Letters. 92, 17, 178702.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Self-organization of structures and networks from merging and small-scale fluctuations

    Minnhagen, P., Rosvall, M., Sneppen, Kim & Trusina, Ala, 15 Sep 2004, In: Physica A: Statistical Mechanics and its Applications. 340, 4, p. 725-732

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Quantifying the benefits of translation regulation in the unfolded protein response

    Axelsen, J. B. & Sneppen, Kim, 1 Oct 2004, In: Physical Biology. 1, 3, p. 159-165 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. 2005
  40. Published

    A Mathematical Model for Transcriptional Interfernce by RNA Polymerase Traffic in Escherichia coli

    Sneppen, Kim, Dodd, J., Shearwin, K., Palmer, A., Schubert, R., Callen, B. & Egan, B., 2005, In: Journal of Molecular Biology. 346, 2, p. 399-409

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Communication boundaries in networks

    Sneppen, Kim, Rosvall, M. & Trussina, A., 2005, In: Physical Review Letters. 94, 23, p. 238701

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Computational architecture of the yeast regulatory network: Workshop on Flexibility in Biomolecules, MAY 15-18, 2005 Tempe, AZ

    Maslov, S. & Sneppen, Kim, 2005, In: Physical Biology. 2, 4, Sp. iss. Sl, p. S94-S100

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Navigating netwoks with limited information

    Rosvall, M., Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 71, 6, p. 066111

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Need, greed and noise: competing strategies and in a trading model

    Donangelo, R., Hansen, A., Sneppen, Kim & Souza, S. R., 2005, In: Physica A: Statistical Mechanics and its Applications. 348, p. 496-504

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Networks and Cities: An Information Perspective

    Rosvall, M., Trusina, Ala, Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review Letters. 94, 2, 028701.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Oscillating gene expressions in regulatory network: Forces, Growth and Form in Soft Condensed Matter: At the Interface between Physics and Biology

    Jensen, Mogens Høgh, Sneppen, Kim & Tiana, G., 2005, In: NATO Science Series : Sub-Series II, Mathematics, Physics and Chemistry. 160, p. 195-202

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Physics in Molecular Biology

    Sneppen, Kim & Zocchi, G., 2005, UK: Cambridge University Press. 319 p.

    Research output: Book/Report › Book › Research

  48. Published

    Searchability of networks

    Rosvall, M., Grönlund, A., Minnhagen, P. & Sneppen, Kim, 2005, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 72, p. 046117

    Research output: Contribution to journal › Journal article › Research

  49. Published

    Self organized scale-free networks from merging and regeneration

    Kim, B. J., Trusina, A., Minnhagen, P. & Sneppen, Kim, 2005, In: The European Physical Journal E: Soft Matter and Biological Physics. 43, 3, p. 369-372

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Spiky oscillations in NF-KB signalling

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2005, In: Proceedings of the National Academy of Science of the United States of America. 103, p. 10840-10845

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Hide-and-seek on complex networks

    Sneppen, Kim, Trusina, Ala & Rosvall, M., Mar 2005, In: EPL. 69, 5, p. 853-859

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Measuring information networks

    Sneppen, Kim, Trusina, Ala & Rosvall, M., Jun 2005, In: Pramana – Journal of Physics. 64, 6, p. 1121-1125

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. 2006
  54. Published

    A communication perspective on network topologies

    Sneppen, Kim & Rosvall, M., 2006, In: Progress of Theoretical Physics. Supplement. p. 103-118

    Research output: Contribution to journal › Conference article › Research › peer-review

  55. Published

    Functional alignment of regulatory networks: a study of temperate phages

    Trusina, Ala, Sneppen, Kim, Dodd, I. B., Shearwin, K. E. & Egan, J. B., 2006, In: PLoS Computational Biology. 1, 7, p. 599-603

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Genetic regulation of fluxes: iron homeostasis escherichia coli

    Semsey, S., Andersson, A. M. C., Krishna, S., Jensen, Mogens Høgh, Massé, E. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 17, p. 4960-4967

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Genetic regulation of fluxes: iron homeostasis of Escherichia coli

    Semsey, S., Andersson, A. M. C., Krishna, S., Jensen, Mogens Høgh, Massé, E. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 17, p. 4960-7 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Longevity of orders in related to the longevity of their constituent genera rather then genus richness

    Bornholdt, S., Sneppen, Kim & Westphal, H., 2006, In: Theory in Biosciences. 128, 2, p. 75-83 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Minimal model of spiky oscillations in NF-kB signaling

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2006, In: Proceedings of the National Academy of Science of the United States of America. 103, 4, p. 10840-10845

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Modeling self-organization of communication and topology in social networks

    Rosvall, M. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 1, p. 016108

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Network models of phage-bacteria coevolution

    Rosvall, M., Dodd, I. B., Krishna, S. & Sneppen, Kim, 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 6, p. 066105

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Self-assembly of information in networks

    Rosvall, M. & Sneppen, Kim, 2006, In: EPL. 74, 6, p. 1109-1115

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Structure and communication in complex networks

    Sneppen, Kim, 2006, In: NATO Science Series : Sub Series III, Computer and sytems sciences. p. 1-28

    Research output: Contribution to journal › Conference article › Research › peer-review

  64. Structure and function of negative feedback loops at the interface of genetic and metabolic networks

    Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-62 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Structure and function of negative feedback loops at the interface of genetic and metabolic networks

    Krishna, S., Andersson, A. M. C., Semsey, S. & Sneppen, Kim, 2006, In: Nucleic Acids Research. 34, 8, p. 2455-2462

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Synchronization model for stock market asymmetry

    Donangelo, R., Jensen, Mogens Høgh, Simonsen, I. & Sneppen, Kim, 2006, In: Journal of Statistical Mechanics: Theory and Experiment. L11001, p. 1-8

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Degree landscapes in scale-free networks

    Axelsen, J. B., Bernhardsson, S., Rosvall, M., Sneppen, Kim & Trusina, Ala, Sep 2006, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 74, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. 2007
  69. Published

    Combinatorics of feedback in cellular uptake and metabolism of small molecules

    Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Proceedings of the National Academy of Science of the United States of America. 52, p. 20815-20819

    Research output: Contribution to journal › Conference article › Research › peer-review

  70. Published

    Efficient degradation and expression prioritization with small RANs

    Mitarai, Namiko, Andersson, A. M. C., Krishna, S., Semsey, S. & Sneppen, Kim, 2007, In: Physical Biology. 4, 3, p. 164-171

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Fear and its implications for stock markets

    Simonsen, I., Ahlgren, P. H., Jensen, Mogens Høgh, Danangelo, R. & Sneppen, Kim, 2007, In: European Physical Journal B. Condensed Matter and Complex Systems. 57, 2, p. 153-158

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Frustration driven stock market dynamics: Leverage effect and asymmetry

    Heden Ahlgren, P. T., Jensen, Mogens Høgh, Simonsen, I., Donangelo, R. & Sneppen, Kim, 2007, In: Physica A: Statistical Mechanics and its Applications. 383, 1, p. 1-4 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Modeling the two-hybrid detector: Experimental bias on protien interaction networks

    Stibius, K. & Sneppen, Kim, 2007, In: Biophysical Journal. 93, 7, p. 2562-2566

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Modelling transcriptional interference and DNA looping in gene regulation

    Dodd, I. B., Shearwin, K. & Sneppen, Kim, 2007, In: Journal of Molecular Biology. 369, 5, p. 1200-1213

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Networks and our limited information horizon

    Rosvall, M. & Sneppen, Kim, 2007, In: International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 17, 7, p. 2509-2515

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Signal integration in the galactose network of Escherichia coli

    Semsey, S., Krishna, S., Sneppen, Kim & Adhya, S., 2007, In: Molecular Microbiology. 65, 2, p. 465-476

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Spreading out of perturbations in reversible reaction networks

    Maslov, S., Sneppen, Kim & Ispolatov, I., 2007, In: New Journal of Physics. 9, 273

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Theoretical analysis of epigenetic cell memory by nucleosome modification

    Dodd, I. B., Micheelsen, M. A., Sneppen, Kim & Thon, Genevieve, 2007, In: Cell. 129, 4, p. 813-22 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model

    Krishna, S., Maslov, S. & Sneppen, Kim, 2007, In: PLoS Computational Biology. 3, 3, p. 451-462

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Combinatorics of feedback in cellular uptake and metabolism of small molecules

    Krishna, S., Semsey, S. & Sneppen, Kim, 26 Dec 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 52, p. 20815-9 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. 2008
  82. Published

    Dynamical genetic regulation

    Jensen, Mogens Høgh, Krishna, S., Sneppen, Kim & Tiana, G., 2008, Springer. (Evolution from cellular to social scales, book series: Nato security through science series B: Physics and biophysics.Conference of the Nato-advanced study institute on evolution from cellular to social scales geilo, Norway april 10-20,2007, p.61-68.).

    Research output: Book/Report › Book › Research › peer-review

  83. Published

    Gene duplication models for directed networks with limits on growth

    Enemark, J. & Sneppen, Kim, 2008, In: Journal of Statistical Mechanics: Theory and Experiment. 2007, p. P11007

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Komolgorov scaling from random force fields

    Jensen, Mogens Høgh, Sneppen, Kim & Angheluta, L., 2008, In: EPL. 84, 1, p. 10011 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Oscillations and temporal signalling in cells

    Tiana, G., Krishna, S., Pigolotti, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, In: Physical Biology. 4, 2, p. R1-R17

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Ribosome collisions and Translation efficiency: Optimization by codon usage and mRNA destabilization

    Mitarai, Namiko, Sneppen, Kim & Pedersen, Steen, 2008, In: Journal of Molecular Biology. 382, 1, p. 236-245 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Signalling and Feedback in Biological Networks

    Krishna, S., Jensen, Mogens Høgh & Sneppen, Kim, 2008, Dynamics on and of Complex Networks: Applications to Biology, computer Sciences, and the Social Sciences ( Modeling and Simulation in Sciences, Engineering and Technolo). Ganguly, N., Deutsch, A. & Mukherjee, A. (eds.). Birkhäuser Verlag, p. Part 1 ( Biological Sciences)

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  88. Published

    The cost and capacity of signaling in the Escherichia coli proetin reaction network

    Axelsen, J. B., Krishna, S. & Sneppen, Kim, 24 Jan 2008, In: Journal of Statistical Mechanics: Theory and Experiment. p. P010018

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    One hub-one process: a tool based view on regulatory network topology

    Axelsen, J. B., Bernhardsson, S. & Sneppen, Kim, 4 Mar 2008, In: BMC Systems Biology. 2, p. 25

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

    Sneppen, Kim, Micheelsen, M. A. & Dodd, I. B., 15 Apr 2008, In: Molecular Systems Biology. 4, p. 182

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    The generation of promoter-mediated transcriptional noise in bacteria

    Mitarai, Namiko, Dodd, I. B., Crooks, M. T. & Sneppen, Kim, 11 Jul 2008, In: PLoS Computational Biology. 4, 7, p. e 10000109

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Dynamical analysis on gene activity in the presence of repressors and an interfering promoter

    Nakanishi, H., Mitarai, Namiko & Sneppen, Kim, 1 Nov 2008, In: Biophysical Journal. 95, 9, p. 4228-4240

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. 2009
  94. Published

    Dominant negative autoregulation limits steady-state repression levels in gene networks

    Semsey, S., Krishna, S., Erdossy, J., Horvath, P., Orosz, L., Sneppen, Kim & Adhya, S., 2009, In: Journal of Bacteriology. 191, 14, p. 4487-4491 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Dynamic features of gene expression control by small regulatory RNAs

    Mitarai, Namiko, Bemjamin, J., Krishna, S., Semsey, S., Csiszovszki, Z., Masse, E. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 26, p. 10655-10659 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Dynamics of the recovery from sRNA-mediated gene silencing

    Semsey, S., Bemjamin, J., Mitarai, Namiko, Krishna, S., Csiszovszki, Z., Sneppen, Kim & Masse, E., 2009, In: Cell Cycle. 8, 18, p. 2863-2864 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Dynamics of uptake and metabolism of small molecules in cellular response systems

    Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: P L o S One. 4, 3, p. e4923

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Dynamics of uptake and metabolism of small molecules in cellular response systems

    Werner, M., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: PLoS ONE. 4, 3, p. e4923

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Modeling of the genetic switch of bacteriophage TP901-1: a heteromer of CI and MOR ensures robust bistability

    Hiizu, N., Pedersen, M., Alsing, A. & Sneppen, Kim, 2009, In: Journal of Molecular Biology. 394, p. 15-28 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Modeling proteasome dynamics in Parkinson's disease

    Sneppen, Kim, Lizana, G. L., Jensen, Mogens Høgh, Pigolotti, S. & Otzen, D., 2009, In: Physical Biology. 6, 3, p. 036005

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Pathway identification by network pruning in the metabolic network of Escherichia coli

    Gerlee, P. D. M., Lizana, G. L. & Sneppen, Kim, 2009, In: Bioinformatics. 25, 24, p. 3282-3288 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  102. Published

    Reinforced communication and social navigation generate groups in model networks

    Rosvall, M. & Sneppen, Kim, 2009, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). 79, 2, Part 2, p. 026111

    Research output: Contribution to journal › Journal article › Research › peer-review

  103. Published

    Relation of intracellular signal levels and promoter activities in the gal regulon of escherichia coli

    Krishna, S., Orosz, L., Sneppen, Kim, Adhya, S. & Semsey, S., 2009, In: Journal of Molecular Biology. 391, 4, p. 671-678

    Research output: Contribution to journal › Journal article › Research › peer-review

  104. Published

    Toolbox model of evolution of prokaryotic metabolic networks and their regulation

    Maslov, S., Krishna, S., Pang, T. Y. & Sneppen, Kim, 2009, In: Proceedings of the National Academy of Science of the United States of America. 24, p. 9743-9748 5 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  105. Published

    Why do phage play dice?

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., 2009, In: Journal of Virology. 83, 22, p. 11416-11420 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  106. Dynamic features of gene expression control by small regulatory RNAs

    Mitarai, Namiko, Benjamin, J. M., Krishna, S., Semsey, S., Csiszovszki, Z., Massé, E. & Sneppen, Kim, 30 Jun 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 26, p. 10655-9 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  107. Dominant negative autoregulation limits steady-state repression levels in gene networks

    Semsey, S., Krishna, S., Erdossy, J., Horváth, P., Orosz, L., Sneppen, Kim & Adhya, S., Jul 2009, In: Journal of Bacteriology. 191, 14, p. 4487-91 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  108. Why do phage play dice?

    Avlund, M., Dodd, I. B., Semsey, S., Sneppen, Kim & Krishna, S., Nov 2009, In: Journal of Virology. 83, 22, p. 11416-20 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  109. Published

    Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda

    Avlund, M., Dodd, I. B., Sneppen, Kim & Krishna, S., 11 Dec 2009, In: Journal of Molecular Biology. 394, 4, p. 681-693

    Research output: Contribution to journal › Journal article › Research › peer-review

  110. 2010
  111. Published

    Simplified models of biological networks

    Sneppen, Kim, Krishna, S. & Semsey, S., 4 Jan 2010, In: Annual Review of Biophysics and Biomolecular Structure. 9, 39, p. 43-59 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  112. Published

    Time walkers and spatial dynamics of ageing information

    Lizana, G. L., Rosvall, M. & Sneppen, Kim, 29 Jan 2010, In: Physical Review Letters. 104, 4, p. 040603 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  113. Published

    Sustainability of Virulence in a Phage-Bacterial Ecosystem

    Heilmann, Silja, Sneppen, Kim & Krishna, S., 1 Mar 2010, In: Journal of Virology. 84, 6, p. 3016-3022 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  114. Published

    Structural correlations in bacterial metabolic networks

    Gerlee, P. D. M., Bernhardsson, P. J. S., Lizana, G. L. & Sneppen, Kim, 1 Jun 2010, In: FEBS Journal. 277, Suppl. 1, p. 114-114 1 p.

    Research output: Contribution to journal › Journal article › Research

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